Ok. So I have everything set up the best I can. I've migrated the old CRM 4.0 database over into SQL 2012, and can add it into CRM 2011 Deployment manager. Despite getting a few warnings that there are fragmented sections and that it's outdated, etc.
But, when I add users, it continuously tells me that the users I'm adding don't have the proper permissions. I've done the best I can there as well. Active Directory is now installed on the CRM server, and I have edited permissions as best I can. The users are set as "Deployment Administrators" in the Manager, yet when importing the Organization, it seemingly refuses to acknowledge that users permission levels.
Is there maybe an issue from installing AD roles after installing CRM 2011? Should I reinstall 2011?